Package: optimos.prime 0.1.2
optimos.prime: Optimos Prime Helps Calculate Autoecological Data for Biological Species
Calculates autoecological data (optima and tolerance ranges) of a biological species given an environmental matrix. The package calculates by weighted averaging, using the number of occurrences to adjust the tolerance assigned to each taxon to estimate optima and tolerance range in cases where taxa have unequal occurrences. See the detailed methodology by Birks et al. (1990) <doi:10.1098/rstb.1990.0062>, and a case example by Potapova and Charles (2003) <doi:10.1046/j.1365-2427.2003.01080.x>.
Authors:
optimos.prime_0.1.2.tar.gz
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optimos.prime_0.1.2.tgz(r-4.4-any)optimos.prime_0.1.2.tgz(r-4.3-any)
optimos.prime_0.1.2.tar.gz(r-4.5-noble)optimos.prime_0.1.2.tar.gz(r-4.4-noble)
optimos.prime_0.1.2.tgz(r-4.4-emscripten)optimos.prime_0.1.2.tgz(r-4.3-emscripten)
optimos.prime.pdf |optimos.prime.html✨
optimos.prime/json (API)
| # Install 'optimos.prime' in R: |
| install.packages('optimos.prime', repos = c('https://jcochero.r-universe.dev', 'https://cloud.r-project.org')) |
- environmental_data_example_2 - Environmental Sample Data - Example 2
- environmental_df - Environmental Sample Data
- species_data_example_2 - Species Sample Data - Example 2
- species_df - Species Sample Data
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 5 years agofrom:45ce28b452. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 30 2024 |
| R-4.5-win | OK | Aug 30 2024 |
| R-4.5-linux | OK | Aug 30 2024 |
| R-4.4-win | OK | Aug 30 2024 |
| R-4.4-mac | OK | Aug 30 2024 |
| R-4.3-win | OK | Aug 30 2024 |
| R-4.3-mac | OK | Aug 30 2024 |
Exports:op_calculateop_listsop_plot
Dependencies:askpassbackportsbase64encbitbit64blobbroombslibcachemcallrcellrangerclicliprcolorspaceconflictedcpp11crayoncrosstalkcurldata.tableDBIdbplyrdigestdplyrdtplyrevaluatefansifarverfastmapfontawesomeforcatsfsgarglegenericsggplot2gluegoogledrivegooglesheets4gtablehavenhighrhmshtmltoolshtmlwidgetshttridsisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelubridatemagrittrMASSMatrixmemoisemgcvmimemodelrmunsellnlmeopensslpillarpkgconfigplotlyprettyunitsprocessxprogresspromisespspurrrR6raggrappdirsRColorBrewerRcppreadrreadxlrematchrematch2reprexrlangrmarkdownrstudioapirvestsassscalesselectrstringistringrsyssystemfontstextshapingtibbletidyrtidyselecttidyversetimechangetinytextzdbutf8uuidvctrsviridisLitevroomwithrxfunxml2yaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Environmental Sample Data - Example 2 | environmental_data_example_2 |
| Environmental Sample Data | environmental_df |
| This function of Optimos Prime calculates optima and tolerance for a data frame of species and environmental factors | op_calculate |
| Optimos Prime calculates optima and tolerance for a matrix of species and environmental factors | op_lists |
| Optimos Prime calculates optima and tolerance for a matrix of species and environmental factors | op_plot |
| Optimos Prime: A package for calculating autoecological data (optima and tolerance range) for biological species | optimos.prime-package optimos.prime |
| Species Sample Data - Example 2 | species_data_example_2 |
| Species Sample Data | species_df |
